Detailed information of SNP:
|
SNP ID:
sf0434375601(Gbrowse)
Chromosome: chr04 Position: 34375601 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1277 | 73.53% | 26.47% |
| All Indica | 795 | 94.72% | 5.28% |
| All Japonica | 379 | 33.77% | 66.23% |
| Aus | 54 | 61.11% | 38.89% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 208 | 94.71% | 5.29% |
| Temperate Japonica | 249 | 32.13% | 67.87% |
| Tropical Japonica | 65 | 12.31% | 87.69% |
| Japonica Intermediate | 65 | 61.54% | 38.46% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 35 | 62.86% | 37.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434375601 | A->G | INTERGENIC | None |