Detailed information of SNP:
|
SNP ID:
sf0434375920(Gbrowse)
Chromosome: chr04 Position: 34375920 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1298 | 82.67% | 17.33% |
| All Indica | 797 | 99.12% | 0.88% |
| All Japonica | 394 | 48.98% | 51.02% |
| Aus | 56 | 94.64% | 5.36% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 255 | 34.51% | 65.49% |
| Tropical Japonica | 73 | 80.82% | 19.18% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 37 | 78.38% | 21.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434375920 | C->T | INTERGENIC | None |