Detailed information of SNP:
|
SNP ID:
sf0434377810(Gbrowse)
Chromosome: chr04 Position: 34377810 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 51.97% | 48.03% |
| All Indica | 778 | 90.36% | 9.64% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 360 | 95.00% | 5.00% |
| Indica II | 209 | 90.91% | 9.09% |
| Indica Intermediate | 209 | 81.82% | 18.18% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434377810 | A->G | INTERGENIC | None |