Detailed information of SNP:
|
SNP ID:
sf0434382652(Gbrowse)
Chromosome: chr04 Position: 34382652 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 55.40% | 44.60% |
| All Indica | 797 | 95.48% | 4.52% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434382652 | T->C | LOC_Os04g58040(LOC_Os04g58040.1) | INTRON |