Detailed information of SNP:
|
SNP ID:
sf0434395828(Gbrowse)
Chromosome: chr04 Position: 34395828 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1359 | 98.75% | 1.25% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 442 | 97.29% | 2.71% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 291 | 97.25% | 2.75% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 93.44% | 6.56% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434395828 | C->T | INTERGENIC | None |