Detailed information of SNP:
|
SNP ID:
sf0434459486(Gbrowse)
Chromosome: chr04 Position: 34459486 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 90.20% | 9.80% |
| All Indica | 799 | 82.98% | 17.02% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434459486 | T->A | LOC_Os04g58160(LOC_Os04g58160.3) | UTR_3_PRIME |
| sf0434459486 | T->A | LOC_Os04g58160(LOC_Os04g58160.1) | UTR_3_PRIME |
| sf0434459486 | T->A | LOC_Os04g58160(LOC_Os04g58160.2) | UTR_3_PRIME |