Detailed information of SNP:
|
SNP ID:
sf0434514252(Gbrowse)
Chromosome: chr04 Position: 34514252 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 50.00% | 50.00% |
| All Indica | 770 | 80.78% | 19.22% |
| All Japonica | 495 | 10.51% | 89.49% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 359 | 76.32% | 23.68% |
| Indica II | 207 | 89.37% | 10.63% |
| Indica Intermediate | 204 | 79.90% | 20.10% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 66 | 46.97% | 53.03% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434514252 | G->A | INTERGENIC | None |