Detailed information of SNP:
|
SNP ID:
sf0434516031(Gbrowse)
Chromosome: chr04 Position: 34516031 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 50.43% | 49.57% |
| All Indica | 784 | 13.65% | 86.35% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 10.96% | 89.04% |
| Indica II | 213 | 15.02% | 84.98% |
| Indica Intermediate | 206 | 16.99% | 83.01% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434516031 | C->A | LOC_Os04g58290(LOC_Os04g58290.1) | SNPs that introduce stop codons |