Detailed information of SNP:
|
SNP ID:
sf0434517507(Gbrowse)
Chromosome: chr04 Position: 34517507 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 65.68% | 34.32% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 497 | 13.68% | 86.32% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434517507 | C->A | LOC_Os04g58300(LOC_Os04g58300.1) | Non-Synonymous SNP |