Detailed information of SNP:
|
SNP ID:
sf0434539668(Gbrowse)
Chromosome: chr04 Position: 34539668 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 66.71% | 33.29% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 496 | 13.31% | 86.69% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 5.69% | 94.31% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434539668 | G->T | INTERGENIC | None |