Detailed information of SNP:
|
SNP ID:
sf0434558081(Gbrowse)
Chromosome: chr04 Position: 34558081 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 66.43% | 33.57% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 13.48% | 86.52% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434558081 | A->G | INTERGENIC | None |