Detailed information of SNP:
|
SNP ID:
sf0434579763(Gbrowse)
Chromosome: chr04 Position: 34579763 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 54.14% | 45.86% |
| All Indica | 772 | 22.41% | 77.59% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 53 | 73.58% | 26.42% |
| Indica I | 361 | 16.34% | 83.66% |
| Indica II | 205 | 24.88% | 75.12% |
| Indica Intermediate | 206 | 30.58% | 69.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434579763 | G->A | INTERGENIC | None |