Detailed information of SNP:



SNP ID: sf0434583025(Gbrowse)

Chromosome: chr04

Position: 34583025
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1416 97.32% 2.68%
All Indica799 99.87% 0.13%
All Japonica497 100.00% 0.00%
Aus64 51.56% 48.44%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 85.71% 14.29%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0434583025 C->T LOC_Os04g58440(LOC_Os04g58440.1) Non-Synonymous SNP