Detailed information of SNP:
|
SNP ID:
sf0434590228(Gbrowse)
Chromosome: chr04 Position: 34590228 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 96.88% | 3.12% |
| All Indica | 798 | 98.62% | 1.38% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 56.67% | 43.33% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434590228 | G->A | INTERGENIC | None |