Detailed information of SNP:
|
SNP ID:
sf0434632435(Gbrowse)
Chromosome: chr04 Position: 34632435 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 61.66% | 38.34% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 497 | 13.08% | 86.92% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434632435 | T->C | LOC_Os04g58560(LOC_Os04g58560.2) | INTRON |
| sf0434632435 | T->C | LOC_Os04g58560(LOC_Os04g58560.1) | INTRON |