Detailed information of SNP:
|
SNP ID:
sf0434636629(Gbrowse)
Chromosome: chr04 Position: 34636629 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.36% | 44.64% |
| All Indica | 798 | 92.61% | 7.39% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434636629 | G->A | LOC_Os04g58564(LOC_Os04g58564.3) | INTRON |
| sf0434636629 | G->A | LOC_Os04g58564(LOC_Os04g58564.2) | INTRON |
| sf0434636629 | G->A | LOC_Os04g58564(LOC_Os04g58564.1) | INTRON |