Detailed information of SNP:
|
SNP ID:
sf0434638275(Gbrowse)
Chromosome: chr04 Position: 34638275 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 55.96% | 44.04% |
| All Indica | 798 | 93.36% | 6.64% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434638275 | A->T | INTERGENIC | None |