Detailed information of SNP:
|
SNP ID:
sf0434675397(Gbrowse)
Chromosome: chr04 Position: 34675397 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 91.75% | 8.25% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 87.53% | 12.47% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434675397 | A->G | LOC_Os04g58620(LOC_Os04g58620.1) | UTR_3_PRIME |