Detailed information of SNP:
|
SNP ID:
sf0434698010(Gbrowse)
Chromosome: chr04 Position: 34698010 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 64.88% | 35.12% |
| All Indica | 798 | 94.99% | 5.01% |
| All Japonica | 497 | 13.68% | 86.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434698010 | A->C | INTERGENIC | None |