Detailed information of SNP:
|
SNP ID:
sf0434699725(Gbrowse)
Chromosome: chr04 Position: 34699725 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 78.60% | 21.40% |
| All Indica | 792 | 75.76% | 24.24% |
| All Japonica | 496 | 87.90% | 12.10% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 371 | 86.79% | 13.21% |
| Indica II | 210 | 46.67% | 53.33% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 334 | 94.31% | 5.69% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434699725 | T->A | LOC_Os04g58650(LOC_Os04g58650.1) | Non-Synonymous SNP |