Detailed information of SNP:
|
SNP ID:
sf0434703002(Gbrowse)
Chromosome: chr04 Position: 34703002 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 50.71% | 49.29% |
| All Indica | 794 | 26.20% | 73.80% |
| All Japonica | 497 | 89.34% | 10.66% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 370 | 23.24% | 76.76% |
| Indica II | 213 | 22.54% | 77.46% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434703002 | G->A | INTERGENIC | None |