Detailed information of SNP:
|
SNP ID:
sf0434727829(Gbrowse)
Chromosome: chr04 Position: 34727829 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 86.84% | 13.16% |
| All Indica | 793 | 82.98% | 17.02% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 207 | 54.11% | 45.89% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434727829 | T->C | INTERGENIC | None |