Detailed information of SNP:
|
SNP ID:
sf0434755453(Gbrowse)
Chromosome: chr04 Position: 34755453 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 96.94% | 3.06% |
| All Indica | 752 | 96.01% | 3.99% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 100.00% | 0.00% |
| Indica II | 202 | 87.62% | 12.38% |
| Indica Intermediate | 197 | 97.46% | 2.54% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434755453 | C->T | INTERGENIC | None |