Detailed information of SNP:
|
SNP ID:
sf0434909034(Gbrowse)
Chromosome: chr04 Position: 34909034 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1339 | 98.43% | 1.57% |
| All Indica | 793 | 99.87% | 0.13% |
| All Japonica | 425 | 95.76% | 4.24% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 287 | 97.56% | 2.44% |
| Tropical Japonica | 79 | 98.73% | 1.27% |
| Japonica Intermediate | 59 | 83.05% | 16.95% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434909034 | T->C | LOC_Os04g59000(LOC_Os04g59000.1) | INTRON |