Detailed information of SNP:
|
SNP ID:
sf0434952650(Gbrowse)
Chromosome: chr04 Position: 34952650 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 51.98% | 48.02% |
| All Indica | 795 | 89.69% | 10.31% |
| All Japonica | 495 | 0.81% | 99.19% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 372 | 91.13% | 8.87% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 66 | 1.52% | 98.48% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434952650 | T->C | INTERGENIC | None |