Detailed information of SNP:
|
SNP ID:
sf0435063235(Gbrowse)
Chromosome: chr04 Position: 35063235 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1359 | 98.31% | 1.69% |
| All Indica | 794 | 99.75% | 0.25% |
| All Japonica | 444 | 95.27% | 4.73% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 298 | 93.62% | 6.38% |
| Tropical Japonica | 83 | 98.80% | 1.20% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0435063235 | G->A | LOC_Os04g59270(LOC_Os04g59270.1) | Synonymous |