Detailed information of SNP:
|
SNP ID:
sf0435102893(Gbrowse)
Chromosome: chr04 Position: 35102893 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 50.07% | 49.93% |
| All Indica | 799 | 86.48% | 13.52% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 20.51% | 79.49% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0435102893 | G->A | LOC_Os04g59370(LOC_Os04g59370.1) | Non-Synonymous SNP |