Detailed information of SNP:
|
SNP ID:
sf0435126185(Gbrowse)
Chromosome: chr04 Position: 35126185 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.85% | 44.15% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 21.43% | 78.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0435126185 | T->C | LOC_Os04g59394(LOC_Os04g59394.1) | INTRON |
| sf0435126185 | T->C | LOC_Os04g59394(LOC_Os04g59394.2) | INTRON |