Detailed information of SNP:
|
SNP ID:
sf0435171895(Gbrowse)
Chromosome: chr04 Position: 35171895 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 51.09% | 48.91% |
| All Indica | 799 | 88.61% | 11.39% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 16.67% | 83.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0435171895 | T->A | INTERGENIC | None |