Detailed information of SNP:
|
SNP ID:
sf0435181311(Gbrowse)
Chromosome: chr04 Position: 35181311 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 50.21% | 49.79% |
| All Indica | 799 | 13.89% | 86.11% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 16.53% | 83.47% |
| Indica II | 213 | 3.76% | 96.24% |
| Indica Intermediate | 211 | 19.43% | 80.57% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0435181311 | G->A | INTERGENIC | None |