Detailed information of SNP:



SNP ID: sf0435187817(Gbrowse)

Chromosome: chr04

Position: 35187817
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 98.52% 1.48%
All Indica799 100.00% 0.00%
All Japonica497 95.98% 4.02%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 79.79% 20.21%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0435187817 C->T LOC_Os04g59494(LOC_Os04g59494.1) INTRON
sf0435187817 C->T LOC_Os04g59494(LOC_Os04g59494.4) INTRON
sf0435187817 C->T LOC_Os04g59494(LOC_Os04g59494.2) INTRON