Detailed information of SNP:
|
SNP ID:
sf0435223372(Gbrowse)
Chromosome: chr04 Position: 35223372 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1217 | 82.99% | 17.01% |
| All Indica | 602 | 66.61% | 33.39% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 275 | 58.55% | 41.45% |
| Indica II | 160 | 85.00% | 15.00% |
| Indica Intermediate | 167 | 62.28% | 37.72% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0435223372 | T->C | INTERGENIC | None |