Detailed information of SNP:
|
SNP ID:
sf0435235465(Gbrowse)
Chromosome: chr04 Position: 35235465 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 55.53% | 44.47% |
| All Indica | 793 | 94.33% | 5.67% |
| All Japonica | 472 | 1.48% | 98.52% |
| Aus | 63 | 1.59% | 98.41% |
| Indica I | 371 | 89.76% | 10.24% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 317 | 0.63% | 99.37% |
| Tropical Japonica | 89 | 3.37% | 96.63% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 26.83% | 73.17% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0435235465 | C->T | LOC_Os04g59550(LOC_Os04g59550.2) | INTRON |
| sf0435235465 | C->T | LOC_Os04g59550(LOC_Os04g59550.5) | INTRON |
| sf0435235465 | C->T | LOC_Os04g59550(LOC_Os04g59550.3) | INTRON |
| sf0435235465 | C->T | LOC_Os04g59550(LOC_Os04g59550.4) | INTRON |
| sf0435235465 | C->T | LOC_Os04g59550(LOC_Os04g59550.1) | INTRON |