Detailed information of SNP:
|
SNP ID:
sf0435237248(Gbrowse)
Chromosome: chr04 Position: 35237248 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 97.69% | 2.31% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 467 | 95.07% | 4.93% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 314 | 94.27% | 5.73% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 91.53% | 8.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0435237248 | G->A | INTERGENIC | None |