Detailed information of SNP:
|
SNP ID:
sf0435274926(Gbrowse)
Chromosome: chr04 Position: 35274926 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 59.22% | 40.78% |
| All Indica | 797 | 97.24% | 2.76% |
| All Japonica | 470 | 1.06% | 98.94% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 316 | 0.32% | 99.68% |
| Tropical Japonica | 89 | 3.37% | 96.63% |
| Japonica Intermediate | 65 | 1.54% | 98.46% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 27.50% | 72.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0435274926 | T->G | INTERGENIC | None |