Detailed information of SNP:
|
SNP ID:
sf0500016244(Gbrowse)
Chromosome: chr05 Position: 16244 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 58.46% | 41.54% |
| All Indica | 788 | 92.77% | 7.23% |
| All Japonica | 496 | 4.03% | 95.97% |
| Aus | 63 | 73.02% | 26.98% |
| Indica I | 370 | 96.22% | 3.78% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 205 | 83.90% | 16.10% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500016244 | A->G | LOC_Os05g00996(LOC_Os05g00996.1) | Synonymous |