Detailed information of SNP:
|
SNP ID:
sf0500017915(Gbrowse)
Chromosome: chr05 Position: 17915 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 98.05% | 1.95% |
| All Indica | 768 | 96.74% | 3.26% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 358 | 96.65% | 3.35% |
| Indica II | 208 | 97.12% | 2.88% |
| Indica Intermediate | 202 | 96.53% | 3.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500017915 | T->G | LOC_Os05g00996(LOC_Os05g00996.1) | INTRON |