Detailed information of SNP:
|
SNP ID:
sf0500026327(Gbrowse)
Chromosome: chr05 Position: 26327 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 88.72% | 11.28% |
| All Indica | 789 | 79.97% | 20.03% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 84.32% | 15.68% |
| Indica II | 211 | 80.09% | 19.91% |
| Indica Intermediate | 208 | 72.12% | 27.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500026327 | A->T | INTERGENIC | None |