Detailed information of SNP:
|
SNP ID:
sf0500026688(Gbrowse)
Chromosome: chr05 Position: 26688 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 86.00% | 14.00% |
| All Indica | 795 | 77.36% | 22.64% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 374 | 83.16% | 16.84% |
| Indica II | 210 | 72.38% | 27.62% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500026688 | G->A | INTERGENIC | None |