Detailed information of SNP:
|
SNP ID:
sf0500033369(Gbrowse)
Chromosome: chr05 Position: 33369 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.19% | 42.81% |
| All Indica | 798 | 31.70% | 68.30% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 20.80% | 79.20% |
| Indica II | 212 | 36.79% | 63.21% |
| Indica Intermediate | 211 | 45.97% | 54.03% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500033369 | G->T | LOC_Os05g01010(LOC_Os05g01010.3) | UTR_5_PRIME |
| sf0500033369 | G->T | LOC_Os05g01010(LOC_Os05g01010.2) | UTR_5_PRIME |