Detailed information of SNP:
|
SNP ID:
sf0500056395(Gbrowse)
Chromosome: chr05 Position: 56395 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 59.15% | 40.85% |
| All Indica | 795 | 34.97% | 65.03% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 374 | 24.60% | 75.40% |
| Indica II | 212 | 40.09% | 59.91% |
| Indica Intermediate | 209 | 48.33% | 51.67% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500056395 | G->C | INTERGENIC | None |