Detailed information of SNP:
|
SNP ID:
sf0500066576(Gbrowse)
Chromosome: chr05 Position: 66576 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 91.12% | 8.88% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 77.67% | 22.33% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 90.15% | 9.85% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500066576 | T->A | LOC_Os05g01040(LOC_Os05g01040.4) | INTRON |
| sf0500066576 | T->A | LOC_Os05g01040(LOC_Os05g01040.3) | INTRON |
| sf0500066576 | T->A | LOC_Os05g01040(LOC_Os05g01040.1) | INTRON |
| sf0500066576 | T->A | LOC_Os05g01040(LOC_Os05g01040.2) | INTRON |