Detailed information of SNP:
|
SNP ID:
sf0500069986(Gbrowse)
Chromosome: chr05 Position: 69986 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 81.96% | 18.04% |
| All Indica | 799 | 72.84% | 27.16% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 79.20% | 20.80% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500069986 | C->A | INTERGENIC | None |