Detailed information of SNP:
|
SNP ID:
sf0500074042(Gbrowse)
Chromosome: chr05 Position: 74042 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1309 | 97.48% | 2.52% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 392 | 92.35% | 7.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 258 | 94.96% | 5.04% |
| Tropical Japonica | 78 | 98.72% | 1.28% |
| Japonica Intermediate | 56 | 71.43% | 28.57% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500074042 | C->A | INTERGENIC | None |