Detailed information of SNP:
|
SNP ID:
sf0500100967(Gbrowse)
Chromosome: chr05 Position: 100967 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 57.77% | 42.23% |
| All Indica | 797 | 31.87% | 68.13% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 20.86% | 79.14% |
| Indica II | 213 | 36.62% | 63.38% |
| Indica Intermediate | 210 | 46.67% | 53.33% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500100967 | C->T | INTERGENIC | None |