Detailed information of SNP:
|
SNP ID:
sf0500149447(Gbrowse)
Chromosome: chr05 Position: 149447 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 80.59% | 19.41% |
| All Indica | 797 | 72.52% | 27.48% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 79.47% | 20.53% |
| Indica II | 212 | 66.51% | 33.49% |
| Indica Intermediate | 210 | 66.19% | 33.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500149447 | A->C | INTERGENIC | None |