Detailed information of SNP:
|
SNP ID:
sf0500157710(Gbrowse)
Chromosome: chr05 Position: 157710 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 84.76% | 15.24% |
| All Indica | 799 | 76.85% | 23.15% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500157710 | T->C | LOC_Os05g01230(LOC_Os05g01230.1) | INTRON |