Detailed information of SNP:
|
SNP ID:
sf0500170952(Gbrowse)
Chromosome: chr05 Position: 170952 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 83.00% | 17.00% |
| All Indica | 798 | 73.81% | 26.19% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 79.73% | 20.27% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 210 | 60.00% | 40.00% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500170952 | G->A | INTERGENIC | None |