Detailed information of SNP:
|
SNP ID:
sf0500172077(Gbrowse)
Chromosome: chr05 Position: 172077 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 82.84% | 17.16% |
| All Indica | 798 | 73.56% | 26.44% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 374 | 79.68% | 20.32% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500172077 | C->T | INTERGENIC | None |