Detailed information of SNP:
|
SNP ID:
sf0500172475(Gbrowse)
Chromosome: chr05 Position: 172475 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 83.13% | 16.87% |
| All Indica | 797 | 73.90% | 26.10% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 79.73% | 20.27% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 209 | 60.29% | 39.71% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500172475 | C->A | INTERGENIC | None |